rs39091098 SNP Detail

Summary

• ID
  rs39091098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123602134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGAGTA TTGTTCAATG
  GCATAGGCAA CCCAAAGTCC CTATACTGAA GTCAAGTAGC AATAGAACCT CCAGATCCAA
  CACTTCATCA GATTGTGACC TGTATGCTTG TAAACCTGCA AAATTTACAG CCTATAGTGA
  ACTTGGGGTA CACCTCCAGA TGTTCTTAAG CCTTAATGAT TGTAATGACA CCCTTAGGGT
  Y
  GGGCAACTTA GAGAAGGCAT GGGTGTAGTG ACAGTAAAAG TGGCTTGTTT TGTTCCTCCT
  GGAGTGAGCT AGATCACTGT GTGCATTATT TATTTGAGTT TAATGATTTT GTAATTTTAT
  TATGTTAGGT AATTTTTAAC ATTAGGCCCT TTCAAATCTG TACAGATACA GATAAACATT
  ATAGTTCTTA CTCTAATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51028500	NES13904400	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39091098					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51028500	NES13904400	PERLEGEN	MM_PANEL	f	SNP	C/T