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rs39092886 SNP Detail
Summary
  • ID
    rs39092886
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr19:44384251 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
               ATTCTACAAG TGAACTGAGT GTTTGGCACC TTACACAGCC AGTTCTAAAA
W
CCAGGCCTCT GGATTGGGCT ATAGGGACAA GAGATGGTTG ATGGTTCTAA           

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss50801826 NES13525189 PERLEGEN MM_PANEL2 f SNP A A A A A A A A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs39092886 SNP A A A A A A A A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss50801826 NES13525189 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44384251 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 1343 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 1193 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 1301 bp proximal
Rr548236 regulatory region 548236 1344 bp distal
Rr548237 regulatory region 548237 394 bp distal
Rr548238 regulatory region 548238 1057 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 547 bp downstream
Tssr156606 transcription start site region 156606 596 bp upstream
Tssr156607 transcription start site region 156607 920 bp upstream
Tssr156608 transcription start site region 156608 1329 bp upstream
Tssr156609 transcription start site region 156609 1539 bp upstream
Tssr159446 transcription start site region 159446 1219 bp upstream
Tssr159447 transcription start site region 159447 1044 bp upstream
Tssr159448 transcription start site region 159448 1018 bp upstream
Tssr159449 transcription start site region 159449 955 bp upstream
Tssr159450 transcription start site region 159450 941 bp upstream
Tssr159451 transcription start site region 159451 861 bp upstream
Tssr159452 transcription start site region 159452 567 bp upstream
Tssr159453 transcription start site region 159453 498 bp upstream
Tssr159454 transcription start site region 159454 479 bp upstream
Tssr159455 transcription start site region 159455 173 bp upstream
Tssr159456 transcription start site region 159456 54 bp upstream
Tssr159457 transcription start site region 159457 25 bp upstream
Tssr159458 transcription start site region 159458 within coordinates
Tssr159459 transcription start site region 159459 90 bp downstream
Tssr159460 transcription start site region 159460 127 bp downstream
Tssr159461 transcription start site region 159461 186 bp downstream
Tssr159462 transcription start site region 159462 214 bp downstream
Tssr159463 transcription start site region 159463 260 bp downstream
Tssr159464 transcription start site region 159464 283 bp downstream
Tssr159465 transcription start site region 159465 307 bp downstream
Tssr159466 transcription start site region 159466 328 bp downstream
Tssr159467 transcription start site region 159467 381 bp downstream
Tssr159468 transcription start site region 159468 629 bp downstream
Tssr159469 transcription start site region 159469 699 bp downstream
Tssr159470 transcription start site region 159470 716 bp downstream
Tssr159471 transcription start site region 159471 733 bp downstream
Tssr159472 transcription start site region 159472 769 bp downstream
Tssr159473 transcription start site region 159473 788 bp downstream
Tssr159474 transcription start site region 159474 813 bp downstream
Tssr159475 transcription start site region 159475 858 bp downstream
Tssr159476 transcription start site region 159476 876 bp downstream
Tssr159477 transcription start site region 159477 896 bp downstream
Tssr159478 transcription start site region 159478 906 bp downstream
Tssr159479 transcription start site region 159479 930 bp downstream
Tssr159480 transcription start site region 159480 958 bp downstream
Tssr159481 transcription start site region 159481 1007 bp downstream
Tssr159482 transcription start site region 159482 1107 bp downstream
Tssr159483 transcription start site region 159483 1198 bp downstream
Tssr159484 transcription start site region 159484 1232 bp downstream
Tssr159485 transcription start site region 159485 1358 bp downstream
Tssr159486 transcription start site region 159486 1365 bp downstream
Tssr159487 transcription start site region 159487 1446 bp downstream
Tssr159488 transcription start site region 159488 1463 bp downstream
Tssr159489 transcription start site region 159489 1517 bp downstream
Tssr159490 transcription start site region 159490 1619 bp downstream
Tssr159491 transcription start site region 159491 1654 bp downstream
Tssr159492 transcription start site region 159492 1705 bp downstream
Tssr159493 transcription start site region 159493 1731 bp downstream
Tssr159494 transcription start site region 159494 1751 bp downstream
Tssr159495 transcription start site region 159495 1869 bp downstream
Tssr159496 transcription start site region 159496 1939 bp downstream
Tssr159497 transcription start site region 159497 1952 bp downstream
Tssr159498 transcription start site region 159498 1964 bp downstream
Tssr159499 transcription start site region 159499 1994 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory