rs39093103 SNP Detail

Summary

• ID
  rs39093103
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114270508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGGACCC AGATGTGCGA
  CATCCGAGAT GTGAGTGGAG CTGGGGTCTG GCTAGAGAGG AATCTAACAG TGTTTCAGTT
  AAGCCACGGG CTGTTTCGTA GTGAGTGTGT GATGGTAGAC ATGGAAGGTG CCGGGTTTGG
  TTGTGTTCCG GGTAGAAAGC TGTGTGTGTG TCCAGCTGTT TAGTCTTTTA ACCAAACAAA
  R
  AAAATGCATG TATACATTTG CTTGTGTGCT TGCTTATTAT TATTATTCCC TTGTTATAGT
  TAGTGCTAGT TTATCTCAGT CTATTGAGTG TAGGCAACGC AGGACTGGAA AAGTGAGGTT
  ATTTCTGCTC ACAAGATGTG TTGGGAAAAT TGTGGCCCCC ATATACTAAT AATCTCAGCA
  CCTGAAGGTT GGAGCCCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51798687	NES14715473	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39093103					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51798687	NES14715473	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114270508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	593 bp distal
Gm73235	predicted gene, 73235	238 bp downstream
Gm73237	predicted gene, 73237	1733 bp upstream
Rr617830	regulatory region 617830	1511 bp distal
Rr617831	regulatory region 617831	444 bp distal
Rr617832	regulatory region 617832	1626 bp proximal
Tssr48058	transcription start site region 48058	1269 bp downstream
Tssr48059	transcription start site region 48059	1227 bp downstream
Tssr48060	transcription start site region 48060	218 bp downstream
Tssr52695	transcription start site region 52695	1721 bp upstream
Tssr52696	transcription start site region 52696	850 bp upstream
Ung	uracil DNA glycosylase	within coordinates