rs39093288 SNP Detail

Summary

• ID
  rs39093288
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5651969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGATCAC ACATAAAGAC
  TTGAGCACAG GAAGGCAGGT GCTTACAGAG AACAGCCAGA GAAAAGACTA CGTTTCCCAT
  AAGGCTCTGC ATCTAGTGTG CTCGGTCTCC CGACAGGCCC TGCGTTCCTC ACCCGCCAGC
  TTTTGCCTGA ACCTTACAAG CTTCTGAGAT GAAGAACCCG GAGGAAGCGG CAGACGGGAA
  R
  CAGCGTATTC ACCTGCGCCC TGGCTCGCTG CGTGGTGCCG CACCGGCTAA GCTGCACCTC
  CTGCCCTGCG ACGTTCTAGT CAGCCGGCCG GCCCCGGTAG ATCGCTTCTT CACGCCCGCC
  GTCCGCCACG ATGCAGACGG TGAGTCCGAG CAGGCCCCGC GGCTCTCGGG CTTCGTGGCC
  CGCGGCAGAC GCCACCCGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss50578382	NES13651102	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs39093288					SNP	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578382	NES13651102	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5651969 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10461	CpG island 10461	within coordinates
Kat5	K(lysine) acetyltransferase 5	1073 bp downstream
Rnaseh2c	ribonuclease H2, subunit C	within coordinates
Rr370434	regulatory region 370434	within coordinates
Rr543090	regulatory region 543090	58 bp distal
Tssr154457	transcription start site region 154457	89 bp downstream
Tssr154458	transcription start site region 154458	25 bp downstream