rs39094509 SNP Detail

Summary

• ID
  rs39094509
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16404317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGATGTAG CAGGTAGAGG
  GGGTGGGACA GTGGGGCTAT AGCCCATGAT AAGGTCTCAA ATTAGCTTCC TTTTGAGTGT
  ATGGTGCAGA CCCACTGTGT TAGTGTCAGA GCAGGCCCAG GATGAAGCCG TGTCTGATTA
  GCCCAGTTCA CCGGGTGTTC CCTGTTTGAC TAGATGTGCT TTGCCTGGGT GTGCTCCAGT
  K
  TTAAGGAGGG ACATAGAGGT GACAGCAACC GTCTAGGTCA TTCAGAAGAC AAGCAAAGTC
  TGGCACAGTA AGAGTGCCCA AGTCGGGTTG AAGAGATGGC TCAGTGGTTA AGAGCATTGG
  CTGCTCTACC AGAGGACCCT GGCTCCATTT CCAGCACTCA TAAGGCAGTT TACAACTGTC
  TTTAACCTAG ATCTAGGGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51469880	NES13978641	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	T	T	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39094509					SNP	T	G	G	G	T	T	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51469880	NES13978641	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16404317 () rs orientation: forward

Symbol	Name	Function Class
Ceacam15	CEA cell adhesion molecule 15	939 bp downstream
Rr642728	regulatory region 642728	1406 bp distal