rs39102478 SNP Detail

Summary

• ID
  rs39102478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:187995083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCCAATA ACGTTCAGAT
  CTTTGTCATA TTTTTTGACT CTAAGTTGTG TGGTTCATAA TGGACTTTGA GAAGTTCTCC
  ATTGTTTTTG TAGGGGGCAT CAGATCTTCA TGCTTAGAAT AAACTATCGA TTTCTTGTGT
  GTTGTTCACC AGGCACCGGC TTCGACTCAT GTTTCTGTCC TCCCTCAGGA CACCCTTGCT
  Y
  TGCCTTCCCT GTGACAGTGT GTCTACAGTC TCCCCAAGAT GAAACATCTC AGGGATCAAG
  TGCCTTTCCA GGATTTCTGG TGAACAGTGC AGCCCTGGAT CTTAATTTAG GAATGCTTCA
  TTGGGTGAAG AATCCTTTTT TGTAATCATG CATTACCTGG CTCTCTCACC GGGCTTCCTG
  TGTTACACCA TTAAAACATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51416328	NES14451690	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39102478					SNP	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51416328	NES14451690	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:187995083 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1191	CpG island 1191	331 bp proximal
Tssr368	transcription start site region 368	13 bp upstream
Tssr10680	transcription start site region 10680	894 bp downstream
Tssr10681	transcription start site region 10681	858 bp downstream
Ush2a	usherin	within coordinates