rs39116134 SNP Detail

Summary

• ID
  rs39116134
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145724760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGTTCTT TGGTTAATAA
  AGCTTCATTC TGAGTTGCAG TGTTGATGTC ACCACTGACT TAAGCCCCTT CTCTTAGTGA
  GGGAACTGTA AGAGGAAGCC GAACAGAATA AACAAGCAGA AGGAGCTAGC TAATGTGGAG
  AACCTTCAAT AGCTACGGCT TAGCGTTCTA CAGGCTATTT TATACGCAGA ACCTTAGACA
  R
  ATACTCCCTT CTAAGTAAGC GATGTAAGCC TTGTTTTGTA CGAAGTCCCT TGTGCCTGTC
  GCCTTCTGTA CGACCAGGAC AATGCAAGCA GATAGAATGT GGCTTGTCTC AGAGGGAAAT
  AGTTTAAGTA TGAAGAATGT TATTTGAGGT TGTTACATCT CTAACCAGAA TTGGGAAATA
  AAATATCTGT GCTATTTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51668492	NES14645371	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39116134					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51668492	NES14645371	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145724760 () rs orientation: forward

Symbol	Name	Function Class
Gm40166	predicted gene, 40166	1290 bp downstream
Syde2	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	within coordinates