rs39117193 SNP Detail

Summary

• ID
  rs39117193
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75412703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCTGTGC CTGCATCCCA
  CCATGCCGGT GTCTCAGCCC TCCCCGACGT TTCATTTCAT GTCTCCCTGC ACCAGTCTTG
  CTCCTCCCTG AGAGCAATGC TTCTGCTTCA CTTCTGTCTC AGTCTCCAGC GTGGGCAGAC
  ACTCACACAC GAGAGGAACC GACACACGAG TGGTTTTCTC TCTTTCTTTT ATAGATTCCT
  Y
  GGGTCTCCTG TGATCAGGCC CAAGCACCTA CAGAATGCTC CTGCTCTCTG TCCCCCAGGT
  AATCAAATAT AGATTGGTTC CTTTTCATGA GGCACGGCTG TTGGGTCTTT GCTCCATTCT
  GAAACCACAA GAGTGCAGAA GCAGACAGGC AGATGCACAG TCAGCACTCA CTCTTTCCCC
  TGAAGAAGGC TATGCAGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533221	NES14628249	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39117193					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533221	NES14628249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75412703 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr404213	regulatory region 404213	1419 bp upstream
Rr495436	regulatory region 495436	121 bp proximal
Tssr4478	transcription start site region 4478	311 bp downstream
Tssr126621	transcription start site region 126621	285 bp downstream
Tssr126622	transcription start site region 126622	255 bp downstream
Tssr126623	transcription start site region 126623	1326 bp upstream
Tssr126624	transcription start site region 126624	1370 bp upstream
Tssr126625	transcription start site region 126625	1529 bp upstream
Tssr126626	transcription start site region 126626	1544 bp upstream
Tssr126627	transcription start site region 126627	1560 bp upstream
Tssr126628	transcription start site region 126628	1871 bp upstream
Tssr129768	transcription start site region 129768	456 bp upstream
Tssr129769	transcription start site region 129769	1317 bp downstream
Tssr129770	transcription start site region 129770	1386 bp downstream