rs39118899 SNP Detail

Summary

• ID
  rs39118899
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72323937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGGGCCCT CGCAGTACCG ATCTGCAACA GACATCTGGC
  TGTCTGGGCT TCAGCAGCTG TGTGCAGAGG GCTAGGAAGT GGGGAAAGGC TTAGGTTAGC
  W
  GAAGGGAAGC CATCCAGGTC CCAGATCCCT TCTTCTTCAG GGAGGGAGTC GAAAGGGAGG
  AGGGGGTGGG GCAGGAGAGG GCACACAGTT GCAGTTATCC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51274560	NES14276915	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs39118899					SNP	T	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51274560	NES14276915	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72323937 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	285 bp distal
Pecr	peroxisomal trans-2-enoyl-CoA reductase	464 bp upstream
Tmem169	transmembrane protein 169	within coordinates
Tssr114	transcription start site region 114	499 bp upstream
Tssr115	transcription start site region 115	485 bp upstream
Tssr116	transcription start site region 116	465 bp upstream
Tssr7298	transcription start site region 7298	359 bp downstream
Tssr12164	transcription start site region 12164	550 bp upstream
Tssr12165	transcription start site region 12165	512 bp upstream