rs39119046 SNP Detail

Summary

• ID
  rs39119046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88862890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTGCAGT TTAATGTCTT
  AATGCTTACC TCTGCTGTCG TCCGGCGGTT GGGAAAGCTG GCCTCTGGGT GATGGACTTC
  CAGCAAGAAG TATTCATAAG TGGAACAAAA GCTCTCAGCC AAACTGCACT TCAGCCAGGG
  GCAGGCACAC AGCTTCCTGA ATTTTAATGA GGAGATTAAG GGAGTGGATC CTAGAAGTGC
  Y
  CTCCTTGATT GCATAACCAG TGGCTTGGAG CTTTCCCAAT AGGAAAGGAA GAGCCCTTGG
  TCCCCCTCAC TGCTCACTAG CCAGGTGGAT GTCTTGGAAA GAGAAGTATT ACTAAGGATA
  GGAGAGTCCA GCGCTGGATT TGGATCCTGA CCAGTATTGG GCCCCGAACA GAAAACTACT
  CAAAGGTCTA CATCTTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51740331	NES14559987	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39119046					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51740331	NES14559987	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88862890 () rs orientation: forward

Symbol	Name	Function Class
Gm8702	predicted gene 8702	1334 bp downstream
Mlc1	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	within coordinates
Rr507763	regulatory region 507763	within coordinates
Rr507764	regulatory region 507764	310 bp proximal
Tssr135826	transcription start site region 135826	828 bp upstream
Tssr135827	transcription start site region 135827	738 bp upstream
Tssr135828	transcription start site region 135828	123 bp upstream
Tssr135829	transcription start site region 135829	90 bp upstream
Tssr135830	transcription start site region 135830	86 bp downstream
Tssr135831	transcription start site region 135831	271 bp downstream
Tssr135832	transcription start site region 135832	1737 bp downstream