rs39120686 SNP Detail

Summary

• ID
  rs39120686
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4840174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAC TGCCTTTCTA ATTTCAATGT
  R
  TCTAGCATTG TGCCTGTGTG TGTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss50908946	NES13484791	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A		G	A		A
ss319612282	CHEV_1_4760032	CHEVERUD	SCREENING_POP	f	SNP					A			G
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs39120686					SNP	G	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908946	NES13484791	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4840174 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	1180 bp upstream
Rr407421	regulatory region 407421	1281 bp distal
Rr407422	regulatory region 407422	1388 bp distal
Rr407423	regulatory region 407423	7 bp proximal
Rr407424	regulatory region 407424	104 bp proximal
Tssr5799	transcription start site region 5799	1143 bp upstream