rs39128447 SNP Detail

Summary

• ID
  rs39128447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88529925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCAGGA AAGGAAGTAG
  CACTGACAGA AAAGCTGCAG GGGGCTCACA AGCCAGGGGA CTCCAGGGCC AGCAAGCCTT
  TAGTGGTGCC CCAGCTAAAA ATGCAGAGAG GCATCAGGGA TGCAAGCCAG AGAGGATAGG
  GTGAAGGCTA TTACTGTCCT GCCTTCAGAC AGCACAAGCC AAGCTGTGCC CAGATCCCTA
  Y
  GGAAACCAAC TCACTGTTCG ACCAGCTGCT GCTCTCTCGC CCTCTCTGGT CTTAGTTTTG
  GCAACAGCTC ATCAGGGCTG AGTATCCTCC AAGCAGACGC TAGCAGGACC CTGGAGTCCT
  CGGAGTCTGC TGTTCCGTGC AAGATGCACC CACCATTCCT CTATCCCACT GCGCCATCCT
  TACACCCATG CCAGCAACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50598753	NES14052502	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39128447					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50598753	NES14052502	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88529925 () rs orientation: forward

Symbol	Name	Function Class
Rr667021	regulatory region 667021	540 bp proximal
Rr667022	regulatory region 667022	1132 bp proximal
Tssr82324	transcription start site region 82324	1093 bp downstream
Tssr82325	transcription start site region 82325	1114 bp downstream
Zfp423	zinc finger protein 423	within coordinates