rs39128974 SNP Detail

Summary

• ID
  rs39128974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27836141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCCATAG CCTCCTGACT
  CTTGCTTCCT CATGTCATGA ACATGAATCC CACTGTTTCA CTGGCTTCCT ACAGCTGCCC
  CTTGCTGCCA CCAACCCTGC CAGGTTCCTT CCTCACACTG GCTTCATTCT TGTAATGAGC
  CTGCCGTTCT GCCAGCCACT GTCAGAGGCA CTGGAGATAA AACCATGAGG TGGGCTCCCA
  R
  TGGTTCTGAT AGGTGGAGCA TGTGGCAAAC CTGCACACTG TGGGAGAGGG CCAGGAGCTG
  TGGGAACTGG GAAGCAGAGG AGGAGGGGCA ACAGGAAAGG GCTACTGAAA GGGTGACCAG
  GGACAGCCTC ACTGAGCCAG TGACACCTCA GCAGACATTG TTGGGGAGGG GGCGGGGGTC
  TTCATGCACA TCTCAGGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51887448	NES14907501	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	G	A	G	A	A	G
ss148632136	ENSMUSSNP2126139	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39128974					SNP	A	A	G	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887448	NES14907501	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27836141 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	1015 bp proximal
Rr644171	regulatory region 644171	1096 bp proximal
Tssr65385	transcription start site region 65385	1658 bp downstream
Tssr65386	transcription start site region 65386	388 bp upstream
Tssr65387	transcription start site region 65387	717 bp upstream
Tssr65388	transcription start site region 65388	814 bp upstream
Tssr65389	transcription start site region 65389	870 bp upstream
Tssr71448	transcription start site region 71448	382 bp downstream
Tssr71449	transcription start site region 71449	392 bp downstream
Tssr71450	transcription start site region 71450	409 bp downstream
Tssr71451	transcription start site region 71451	802 bp downstream