rs39132170 SNP Detail

Summary

• ID
  rs39132170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127797445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGCCTCT CAGGTGATAG
  CACTCCACAG TAGCTTGCTT GCAGCTCACT TCCAGCCCTC CTCCCGGGGG GTGGGGGTGG
  GGGTCTCAGA TGTGTTTTGG AGAGTCCCAT CACTATTGCG TTTCAATGCT GGGAAGAAAT
  TTTGTTAGAG ATAGTTCAAA GGCAGAATCT CCATCTTCTC TTAGATTCGT TGCTTCTGCA
  Y
  TGAACTGACA AACCATCTCT TGCTTCATTG GAGCCAGTTC ATCCATCTGT TCTTGGCAAG
  GTGGGTGGTG GGTACACTCA GAAATCTGTC GGATTTCCTG AGTTGGAGTC CCAGCAAGAT
  CAGGTATAAG AAAAGTGACT TCAAACAACC TATTTAATCT CCCCGTTACT TGGTTTTTCT
  TGTCTTTAAA TCTCCTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51616274	NES14660733	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs39132170					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616274	NES14660733	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127797445 () rs orientation: forward

Symbol	Name	Function Class
Rr52	regulatory region 52	within coordinates
Rr584916	regulatory region 584916	1427 bp distal
Rr584917	regulatory region 584917	1714 bp distal