rs39132792 SNP Detail

Summary

• ID
  rs39132792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127727078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAGCAA CCCCTGTGTC
  CTCTACACCC TGCAGCTGAA CCAGCTTTGT GCCTTACAGC TGCTCCAGAA TATCTGTCTA
  TCAGAGCAAT AGGGACTAAG GGACTCTGAA CTATCTTAGC AGCCAAGAGG TCCTCAAAAT
  CCTTGAGTGG CCAGCACCCT ACAAAGTGAA CACTGGGACT TTCTAAACAA AGGGAGATTG
  Y
  GGATATATTT TTCTGCAGTG AACCCACGTC CCTTCAACGA TTCGTCCACT TACTGTCAAA
  AGCCATTCCT CATACATACT GCATCTCTCT TACTTTTTCT GACCACAGTC TGCACTCTTG
  TTGGTGTTGG GGCTTCAAGA ACTCTGTACG ATTAAGGAGT CCATAGAATT TCCGGGTAAA
  GTCAGAGAGA ATAGGAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss50945983	NES14148047	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T	T	C
ss323530342	CHEV_10_127328265	CHEVERUD	SCREENING_POP	f	SNP							T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs39132792					SNP	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50945983	NES14148047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127727078 () rs orientation: forward

Symbol	Name	Function Class
Rr226507	regulatory region 226507	1878 bp distal
Rr226508	regulatory region 226508	within coordinates
Rr385469	regulatory region 385469	573 bp upstream