rs39137495 SNP Detail

Summary

• ID
  rs39137495
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126910227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGAATAA TACTTACTGG
  GCCAAACTAC CCATTACCCA TGACTCCAAA CTTGCGTTAT CTCTGTTTTC TCCACCAATT
  GCTCATTCTT CTTCTATTTC AGGTCACAAA TGGAGGGCAG AGCAATGGTA CTGAGTTATG
  AGTTGGCAAG TACCTCACTA TGTGTGTCTC AAATTACAAG TATAATTAGA TTTTTGTTCA
  M
  CTTTGACTGG CCTTTCTGAA CAATAATTTC CACTTCTTCA TATTAGTGAT AAATGATCCC
  ACCCTTTGGG CTTGTTGTGA ATATATATGA AAGTATGCTG TAAATGATTA CATGTTATAC
  GTGCTAATTA CTGTGCTAGA AACTGAACTT GGAGCATAGA GTTTTGTCAG GTTATAGGTT
  TTTTTCTCCC CTATAACCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50942027	NES14261688	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39137495					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50942027	NES14261688	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126910227 () rs orientation: forward

Symbol	Name	Function Class
Agap2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	927 bp upstream
Rr213499	regulatory region 213499	1627 bp distal
Rr213500	regulatory region 213500	574 bp proximal
Rr224393	regulatory region 224393	773 bp proximal
Tssr96119	transcription start site region 96119	907 bp upstream
Tssr96120	transcription start site region 96120	971 bp upstream