rs39140462 SNP Detail

Summary

• ID
  rs39140462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:40289072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTTTAAA CTAACGCCGG
  AATCATTGAT GTGTCCCTCT GGCATTTGAC TAACACGGAA GAAACACTCT CTAGGACCCT
  GATCTAGGGT CCCTTTCAGG GATATGATAG CCAAAGACCC ATGACTGGTA GAATTCCTTT
  CCACCCACAG CCCCATGCCA GGTGATGTCC AAATGCCACC AGAACTTCTG AAAACATCGC
  Y
  TATTGTGTTT TTAAGGATCC TTGGGCCTGT ATCCAGGCCA TACACTCAGC ACAGGAATGG
  ATGAGGTATA CCAGATTCCC AAGGTACACT GAATTTCCTT CATGGCTTGG TAAGGTGATC
  CGAATTCCCA CGATCCAGCC TCCAGGCTAA TGTCCTCTAT ATAGATGTAA ATCTTCTCAT
  TGGTCCTATT TTTCCAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50677879	NES13999656	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39140462					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677879	NES13999656	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40289072 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gramd1b	GRAM domain containing 1B			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr676805	regulatory region 676805			1366 bp distal
Rr676806	regulatory region 676806			1498 bp distal
Rr676807	regulatory region 676807			1447 bp distal
Rr676808	regulatory region 676808			940 bp distal
Tssr88904	transcription start site region 88904			1637 bp upstream
Tssr88905	transcription start site region 88905			1513 bp upstream
Tssr88906	transcription start site region 88906			1418 bp upstream
Tssr88907	transcription start site region 88907			1361 bp upstream
Tssr88908	transcription start site region 88908			1332 bp upstream
Tssr88909	transcription start site region 88909			929 bp upstream