rs39147239 SNP Detail

Summary

• ID
  rs39147239
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133988514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTTGGAG GGTGGCTAAC
  AACAGTAAGG AGAGAAGTGC TGGCGAGACC ACCAATACCC CTGATGTACA AGACAAGGAA
  AAGGGCCCGA GAAGGGAGTC TAAGAAGGCG ATGCCAACTC CGGGGGCACT CTGGACAAAG
  AGTCTGGAAA GTATTAAAGG TTCTAGATCC CAGAGCTTCC AGGTTGCTCA CAAAGGGCAA
  K
  GTCAACCATC TATCACCTTC AAGGAAAGCC AGAAACTGTG GAAAAATCCG AAGCTTCAGA
  GACTTAGCCA CTCGAGCAGC AGGTGGTGAA GTGGGGAGGC ACCGAAAGCA CCACAGCCAC
  CCGCCCTTCC TGAAAGGTCC TGCTGTGCGT GCTCCGCGGT GAGCAAGGAA CCCAGCTCTC
  AAACCTAGTG TCCCCACCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51373646	NES14471781	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39147239					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51373646	NES14471781	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133988514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi758	CpG island 758	142 bp proximal
Gm19497	predicted gene, 19497	within coordinates
Gm57140	predicted gene, 57140	272 bp upstream
Rr1740	regulatory region 1740	within coordinates
Rr12446	regulatory region 12446	714 bp distal
Tssr8846	transcription start site region 8846	296 bp upstream
Tssr8847	transcription start site region 8847	319 bp upstream
Tssr8848	transcription start site region 8848	360 bp upstream
Tssr13763	transcription start site region 13763	35 bp downstream
Tssr13764	transcription start site region 13764	86 bp downstream
Tssr13765	transcription start site region 13765	134 bp downstream