rs39147314 SNP Detail

Summary

• ID
  rs39147314
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44383654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATA CAATCGAATA CACTCGAATT
  R
  CTTCCCACCA AATTTGATCA CTTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50801830	NES13525187	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39147314					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50801830	NES13525187	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44383654 () rs orientation: forward

Symbol	Name	Function Class
D19Mit67	DNA segment, Chr 19, Massachusetts Institute of Technology 67	1940 bp proximal
D19Mit67.2	DNA segment, Chr 19, Massachusetts Institute of Technology 67.2	1790 bp proximal
D19Nds1	DNA segment, Chr 19, Nuffield Department of Surgery 1	1898 bp proximal
Rr548236	regulatory region 548236	747 bp distal
Rr548237	regulatory region 548237	within coordinates
Rr548238	regulatory region 548238	1654 bp proximal
Scd1	stearoyl-Coenzyme A desaturase 1	within coordinates
Tssr5524	transcription start site region 5524	1144 bp downstream
Tssr156606	transcription start site region 156606	1193 bp upstream
Tssr156607	transcription start site region 156607	1517 bp upstream
Tssr156608	transcription start site region 156608	1926 bp upstream
Tssr159446	transcription start site region 159446	622 bp upstream
Tssr159447	transcription start site region 159447	447 bp upstream
Tssr159448	transcription start site region 159448	421 bp upstream
Tssr159449	transcription start site region 159449	358 bp upstream
Tssr159450	transcription start site region 159450	344 bp upstream
Tssr159451	transcription start site region 159451	264 bp upstream
Tssr159452	transcription start site region 159452	17 bp downstream
Tssr159453	transcription start site region 159453	76 bp downstream
Tssr159454	transcription start site region 159454	108 bp downstream
Tssr159455	transcription start site region 159455	401 bp downstream
Tssr159456	transcription start site region 159456	523 bp downstream
Tssr159457	transcription start site region 159457	567 bp downstream
Tssr159458	transcription start site region 159458	597 bp downstream
Tssr159459	transcription start site region 159459	687 bp downstream
Tssr159460	transcription start site region 159460	724 bp downstream
Tssr159461	transcription start site region 159461	783 bp downstream
Tssr159462	transcription start site region 159462	811 bp downstream
Tssr159463	transcription start site region 159463	857 bp downstream
Tssr159464	transcription start site region 159464	880 bp downstream
Tssr159465	transcription start site region 159465	904 bp downstream
Tssr159466	transcription start site region 159466	925 bp downstream
Tssr159467	transcription start site region 159467	978 bp downstream
Tssr159468	transcription start site region 159468	1226 bp downstream
Tssr159469	transcription start site region 159469	1296 bp downstream
Tssr159470	transcription start site region 159470	1313 bp downstream
Tssr159471	transcription start site region 159471	1330 bp downstream
Tssr159472	transcription start site region 159472	1366 bp downstream
Tssr159473	transcription start site region 159473	1385 bp downstream
Tssr159474	transcription start site region 159474	1410 bp downstream
Tssr159475	transcription start site region 159475	1455 bp downstream
Tssr159476	transcription start site region 159476	1473 bp downstream
Tssr159477	transcription start site region 159477	1493 bp downstream
Tssr159478	transcription start site region 159478	1503 bp downstream
Tssr159479	transcription start site region 159479	1527 bp downstream
Tssr159480	transcription start site region 159480	1555 bp downstream
Tssr159481	transcription start site region 159481	1604 bp downstream
Tssr159482	transcription start site region 159482	1704 bp downstream
Tssr159483	transcription start site region 159483	1795 bp downstream
Tssr159484	transcription start site region 159484	1829 bp downstream
Tssr159485	transcription start site region 159485	1955 bp downstream
Tssr159486	transcription start site region 159486	1962 bp downstream