rs39149175 SNP Detail

Summary

• ID
  rs39149175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128845303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAGGCCA GCCTGAACAG
  CGTAGCGAGA CTGTATCTCA AAATGAAAAA GCAAACTGAC GCCAGGGGTA GAGAATAATA
  GTGAGCACCA TAGATTCTTA AGAATGATTT AAAGACGTAT AAAAAAGAGG AGTAAGAGAT
  TTCCGCATTT CTGCTAGATA GCAGGAAGTG TATTCCCTGT CTGATAGACA TAGATTTCCC
  Y
  GAGCCTAACC TAAACGTGAC ATAGGCTTTC TCTGTTAAAC AGCGTGCGAA GGGTTTGCGG
  TAGAGGCAAG GCTCACTACA AAATGATTCC CCCAGAGATG TTATAAAATA CATTCTAAAA
  ACATAGAGCA TGGAGGAGCA GAGTCAGGAG CCGCAGGCCA TGCAATCCTC CTTACAAGTG
  GAACTTAGTA TCTACACTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51843343	NES14704484	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	T	C		T	C		C
ss149245178	ENSMUSSNP5354276	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss321688094	CHEV_5_129274114	CHEVERUD	SCREENING_POP	f	SNP												T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs39149175					SNP	C	C	T	T	T	T	T	C	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843343	NES14704484	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128845303 () rs orientation: forward

Symbol	Name	Function Class
Gm42875	predicted gene 42875	1794 bp upstream
Rimbp2	RIMS binding protein 2	within coordinates
Rr621176	regulatory region 621176	938 bp proximal
Rr621177	regulatory region 621177	1251 bp proximal