rs39158410 SNP Detail

Summary

• ID
  rs39158410
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4251938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAGCTCTG CAGCTCCACT GGGCTGCACT GGGCATAGGT
  GAAGGGCATA CTAGATGGAG GAGCAAGGTG TCTGCACCAA GGATCGAGCT CTGGACCAGA
  R
  CCCTAACGTG GGAAGTGTAG ACCCTCCCGG GTCGCTAACT TTAGTGTGTG GGGTTACAGG
  GTCAAATCAA GATAGTCCGC GCTCAATCTG GGCTGGGGAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50585404	NES13654364	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39158410					SNP	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50585404	NES13654364	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4251938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10391	CpG island 10391	within coordinates
Gm30082	predicted gene, 30082	within coordinates
Rad9a	RAD9 checkpoint clamp component A	277 bp upstream
Rr405788	regulatory region 405788	75 bp downstream
Rr542669	regulatory region 542669	176 bp distal
Rr542670	regulatory region 542670	within coordinates
Rr542671	regulatory region 542671	1465 bp proximal
Rr542672	regulatory region 542672	1770 bp proximal
Tssr154297	transcription start site region 154297	123 bp downstream
Tssr157469	transcription start site region 157469	514 bp upstream
Tssr157470	transcription start site region 157470	350 bp upstream
Tssr157471	transcription start site region 157471	316 bp upstream