rs39158794 SNP Detail

Summary

• ID
  rs39158794
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47954711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGCTCAG AGACTGGCTC
  ATGGTATGTT GGAGTTTTGT TGTAGGTGTG GGGATCCCGA AACTCAGGAA AATGGCTGGG
  GATGGGTGGC AGATGGGGTC AGTTCTGCCC TGCAGTAAGG GCCTTGGGTG TCACTGGCTG
  ATTGGTTACT GGAGGTTCAT TGATGACCAT CCTCTGAGCC CGTTTTGTAT AAGCAGGTAG
  M
  GTGTCAACAC TGAAGTCCAT TTCAACCAAT GTGACCACGA TGTCCAACAG TGTGGGTTTG
  GTTCTGGCTG TGTGTTCGCA GTATGACTTG GCACCTCTCC GGATTTCTGA GATGTAGCTA
  AACAGCATTT CCCTTAAACC CCGCCTCTTT CAGCAAGGAG CTCACAACTA CTTGCAGGGC
  CTTCCTCTTG GCCTGATGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51246486	NES14286105	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs39158794					SNP	C	C	C	C	C	C	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51246486	NES14286105	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47954711 () rs orientation: forward

Symbol	Name	Function Class
Gm19206	predicted gene, 19206	within coordinates
Rr371240	regulatory region 371240	within coordinates
Tssr6618	transcription start site region 6618	1886 bp upstream