rs39170884 SNP Detail

Summary

• ID
  rs39170884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65518739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACGGGGTG AAGGGTGGCC
  TTGGAGTTGC TGCTTTCTCT AGCTTTTCTT TTTTAACTTT ATTTTTTTAA TTGTTTTTGC
  TTTCCCACGG ATACTCCTCT CCCCTCCCCT CCCCTCCCCT CCCCTCCTCT TTTCTTCTCT
  CCTCTCCTCT GCCATTTAAA CTCATTTCCA ATTCTTTGAT GGAAGAAATC TAAAAAAATA
  Y
  GTCAAGGTTA TACATGTCAG AGCTTACGTT CCTGATTTCA TATTGAAAAG CATAGATATG
  ATAAGTGTCT TTCCCAAGGT CACACAGCTT TTTAATGGAA GCACCTGGGT TTCCTGAATA
  TGGTTATTGA TATATTCAAA TGATACGCAT TCATCTGTCT TATCCTAGCC TCTGAAGGTA
  AAAGACAGAA GAGAGAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50444028	NES13447095	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39170884					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50444028	NES13447095	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65518739 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpk2	alpha-kinase 2			Intron
				Noncoding-Transcript-Variant
D18Mit182	DNA segment, Chr 18, Massachusetts Institute of Technology 182			352 bp distal
Rr539524	regulatory region 539524			694 bp proximal
Tssr151600	transcription start site region 151600			357 bp upstream
Tssr151601	transcription start site region 151601			387 bp upstream