rs39175969 SNP Detail

Summary

• ID
  rs39175969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65546503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTTACAAA GGTAGGCAGA
  TGCCTCTCAG GTCTTGGTAA GAACGAGGCT GACTGAGTGA GGTGCAGAGC TTCCAGTCAG
  GAGGCAGAGT CATTTGATAG TTGGCAAGAA AAGGAGGCGG ATTATGAAGG CTCTTGAACT
  GAAGCTGATG GAACGCAGTT GGTTTCTGAT GACGTCATAG ACCTCCACCA CGGGCCAACA
  Y
  GTGATGAGGA CGACAGATGA GAGTCACTTC AGGCCAAATG CAGAACAGGT TGGGCTGAGG
  GATACTGCTG CATGCCGCCG CTCCATTCAG GAACACTCTA AGGAATTTGT TCTCAACGAC
  TCAAAATTGT TGTTCTTCTT TTTCTTGTGA GTATGTGAGT GGGAGAGTGT GTGCGTATGT
  GTGTGCGTTG GTGGAGTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50965360	NES13945802	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39175969					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50965360	NES13945802	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65546503 () rs orientation: forward

Symbol	Name	Function Class
Gm65444	predicted gene, 65444	within coordinates
Rr577716	regulatory region 577716	1381 bp distal
Rr577717	regulatory region 577717	within coordinates
Rr577718	regulatory region 577718	234 bp proximal
Tssr33467	transcription start site region 33467	196 bp downstream