rs39176580 SNP Detail

Summary

• ID
  rs39176580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110230207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGCTAGC CTCTAAGCTT
  GAAGGCCCAG GGCACAGGGA CTATAAGATT AGGAGGCTAA GGTGACGCCA TGTACCTGTC
  TAGCTAGGAG GCCTGGCCAA TTGGCTCACT CAGCCAATCC CTGAAGACCA ATTATTGTGC
  TTTCCTGAAA GTTTTGCTAG CCGTTTGGAG ATGCTGAATT GCCTGTACCT CCAGCTAGTT
  Y
  AGGGTTTCTG GAAGCAGTTT GGTTTGGGAA GGGCATTTCA GAACCCGGAC CGTGGGACTA
  GATGTTTTCT TCCTTACAGA AGCCTATATA CACAATGAAA TGCGCTGGTC CTTTGTCTGA
  GTCTACACAC AACCTGATAG AAGCAGCTCC TGCTTCAGAA GAAAGCAGCC TATAGCACAT
  AGACTCGCCT CTGGCTGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50455947	NES14118514	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C	C	C	C	C	C		T	T	C	T		C
ss322397538	CHEV_7_117774514	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39176580					SNP	C	T	T	C	C	C	C	C	C	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50455947	NES14118514	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110230207 () rs orientation: forward

Symbol	Name	Function Class
Adm	adrenomedullin	1180 bp downstream
Cpgi19577	CpG island 19577	1728 bp distal
Cpgi19578	CpG island 19578	197 bp distal
Gm28863	predicted gene 28863	103 bp upstream
Gm72687	predicted gene, 72687	778 bp upstream
Rr400547	regulatory region 400547	492 bp downstream
Rr653271	regulatory region 653271	789 bp distal
Rr653272	regulatory region 653272	288 bp distal
Rr653273	regulatory region 653273	634 bp distal
Rr653274	regulatory region 653274	713 bp proximal
Tssr68502	transcription start site region 68502	1469 bp downstream