rs39179844 SNP Detail

Summary

• ID
  rs39179844
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5709984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAACCTGGG AGTTCACTCC CACCCCAGTT TGCAGTCCCA
  CCCACGGTTA CACCTTGTCC CAGGACCAGG GAACAAATGT CTAAGTCCTC CTAGGTTAAA
  W
  GCTGCCCTGG CTCCACCAAA GCTTAGGTTC TCCCATTCAA GACACGGAAG CTGCTTTTCC
  TGCTAATGAT GAGAACAGGG TTTCATCACA CAGATATGGA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50578096	NES13650496	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	T	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39179844					SNP	T	T	T	A	T	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578096	NES13650496	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5709984 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10466	CpG island 10466	779 bp proximal
Sipa1	signal-induced proliferation associated gene 1	within coordinates
Tssr157621	transcription start site region 157621	1705 bp upstream
Tssr157622	transcription start site region 157622	1669 bp downstream