rs39180403 SNP Detail

Summary

• ID
  rs39180403
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:62321082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCA GTCTGGGGTA CGTGAGACAC
  S
  GCCTCAAAAG ACAGCTGAAC AAATC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss50718953	NES14253125	PERLEGEN	MM_PANEL2	f	SNP	C			G	G	C		C		C
ss136549569	ENSMUSSNP5422455	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss322982306	CHEV_9_62261607	CHEVERUD	SCREENING_POP	f	SNP							C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs39180403					SNP	C	C	C	G	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50718953	NES14253125	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:62321082 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21896	CpG island 21896	1647 bp proximal
Gm40523	predicted gene, 40523	537 bp downstream
Rr1154	regulatory region 1154	849 bp upstream
Rr196313	regulatory region 196313	282 bp distal
Rr196314	regulatory region 196314	119 bp proximal
Rr196315	regulatory region 196315	1919 bp proximal
Rr201157	regulatory region 201157	1281 bp distal