rs39185939 SNP Detail

Summary

• ID
  rs39185939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19917403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTTTTT GGTACCACCC
  CAAATGTTCT GTACTCAGAA TAAGAACAGA ATAGGGAAAT ACTTTCTGGA CAGCTTTCTC
  TCTGTTGAAG TCTCCTCGAA TTCCATGGTT TACGGGCAAC CTTCTCCCAA ACAAGCTGCT
  GTTTGGAAAT GCGATTCTTT TGGAGTTCCG CCCTCTGCTA ATGTAGCTTC TACAGAGGGT
  Y
  GGCTTCTCCC AAAGGCCCCA TCTTCTTTCA CGAGCAGTCT CACCCCCTGT CCTGACCTTG
  GCTGTCCTAA GACATTGAAA CATACTGTGA AAGAAGTGTA AACTTAGCAC CACAGAAAGA
  TAAAAGGGAC CGATACACCT TCAATGGTTG TAGACACACA CCTGCCTTGA ATCATACCAA
  GATTCAGCTA CAGAAACTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss51072297	NES14365085	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs39185939					SNP	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51072297	NES14365085	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19917403 () rs orientation: forward

Symbol	Name	Function Class
Gpr141b	G protein-coupled receptor 141B	282 bp upstream
Tssr121608	transcription start site region 121608	478 bp upstream
Tssr121609	transcription start site region 121609	418 bp upstream
Tssr121610	transcription start site region 121610	279 bp upstream