rs39189147 SNP Detail

Summary

• ID
  rs39189147
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:98980129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACGCTGAG TACAGACCTA
  AGAAAGTGGT GACGCCATGT TGAATAGGTA AAGATAATTA GATGCTCTTC TCACTCAAAC
  CATAGCGAAT ACATTCTGAA GTACTTATGT GCGCATCCAA GCCCCCTGAA TACAAGCAGG
  TTTCTTAGAG TCACAGGACT GGGCGAGGCC ACCTAGCCCC ACTTCCGGGT GGAAGACAGT
  R
  TTGACCACAG GCAGGGTGGG CATGTTCCTA CCTTTCCCTT TTGGGAGTGT GGACCGAGAG
  CTGTCCATTG GTAGAGGCAT GCGGGTTCAT GATTAGGGAG GACTTGGAAG GTGCCGAGGA
  CGAGACACAT GTGCTGGTCA GGTCTAGGCT GCTGTGGTTG CTGCTTGTGG TTTCCTCTGC
  AGTGTGGGCA CTTGTCACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51381541	NES13732415	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39189147					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51381541	NES13732415	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:98980129 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp1	forkhead box P1			Intron
				Noncoding-Transcript-Variant
Rr635315	regulatory region 635315			1117 bp distal
Tssr57961	transcription start site region 57961			48 bp upstream