rs39190035 SNP Detail

Summary

• ID
  rs39190035
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:80450254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCACATTGG GGTTGTCTGT CATATGACGT AGCTCAGTGA
  CATAGTACTG TAGCTATGTG ACATTAGACT GTAGGTCCTG GGTTTCATCT TCAGCTCTGG
  M
  TCCTTGATCA CAACCAGTGG TCGATAGCCA GAACATGGTC TGGGGCGAGG TGTTAAGAGT
  AGTGGACAGC CCAGCTGAGC ACATCACCAA GACAGAAAGA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50523612	NES13681176	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39190035					SNP	A	A	C	A	A	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50523612	NES13681176	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:80450254 () rs orientation: forward

Symbol	Name	Function Class
Ctdp1	CTD phosphatase subunit 1	920 bp downstream