rs39202325 SNP Detail

Summary

• ID
  rs39202325
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78182027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTAGCCT CTCTTTAAAG
  GGGATTTGAG GAGTTGCTCC ATCCTGGCCC ACAGCCTTGG GTACCTATGT CTGGTGGAGA
  AACATACCCT GTGGCCTGCT TTGAGCAGCC ACTGGCTGGA AAGGCTGGGA AAGAAGAAGG
  CTGGGGCAGG GTGGGAGCAG TCACCAAAGC CATCACCACC CCCCTCGGTT TGGTAACACC
  R
  GGAATCCCTT CCACCACCAT GAACTTCACT GATCAGCTCA TAGTTAGGCT ACTGTGCCTC
  CCTTTACCTT CCCAGAAGGT TCTTAAGGAT GGGTCCTGTT TGTTAACAGG TAACCTCCTG
  GCCGGTGGTG GTGGTGGCAC ACACCTTTAA TCACAGAACT TGGGAGGCAG AGACAGGCGG
  ATTTCTGAGT TCGAGGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss51284802	NES14519460	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs39202325					SNP	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51284802	NES14519460	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78182027 () rs orientation: forward

Symbol	Name	Function Class
Cpgi455	CpG island 455	1184 bp distal
D1Mit215	DNA segment, Chr 1, Massachusetts Institute of Technology 215	969 bp proximal
Rr370614	regulatory region 370614	1442 bp downstream