rs39202784 SNP Detail

Summary

• ID
  rs39202784
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60744346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCGAGTG CATGTGGAGC
  AGTAAGGCTG ATCCCCAGCC TGGGATGCCT CCCTCTTTGG AGTTCCACCT GTAGAGAATA
  TTCAAGCACA CCTCTAAATC CTGCCATTCC ACCCAGGAAC ACCCCGCTCG ATCCCCCAAG
  GCTCAGTAGC AGCCTCTGCT CCAGTTAGAC CCAGAGGCCT CACAGCAGGA AGAGGACTCG
  M
  AGGAAGCAGA AGGATGAGGG CTCTACAGGA ACTCCTGGTT CCCTTCTCCT GTCAAAAAGG
  CCACAGGCAC AGACAGAAGA GGGAAGACTG GCCCTGGGTT CAGCCGGTAG CTGTCTCTGC
  AGGTAAAAGG CACCCTGAAG ACCCTTGGCT GACCAAGGCC TTGCTGCAAG GTCCTGGCAG
  GACCTGGCTG TCATAGCATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50418256	NES13463270	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39202784					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418256	NES13463270	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60744346 () rs orientation: forward

Symbol	Name	Function Class
Rr538593	regulatory region 538593	1180 bp distal
Rr538594	regulatory region 538594	933 bp distal
Rr538595	regulatory region 538595	1967 bp proximal
Synpo	synaptopodin	within coordinates
Tssr153456	transcription start site region 153456	1206 bp upstream
Tssr153457	transcription start site region 153457	1162 bp upstream