rs39205617 SNP Detail

Summary

• ID
  rs39205617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:62748999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGCTGGG TGACCGCTAA
  CTTGGCATGA GTTCCCTCTC ATGACTATAT CTGAGTTTGA GCCCTCTTTC AAGTCCCCCC
  CTCTGATGGT TCACGCTTCA GCAGGCAAGG ACAGATCTAG AGGTTCTGTG CTGTGCTTTC
  TGGTTATGAA ACATAGGGGG TCCAGACATC TTAAATACTT AATGATTGTG AGACCTGTTG
  Y
  ATTCCAGACT ATTTGGCCAA TGTTCTTGCC AGATCCCAGA CTGTACCCAC ACTCCCACAT
  TTCTTCACCC TTACTTTTTA TAAGTTTTAC AGATTTTGTA TTTAAGCTTT GCTGTTTTCC
  CTCCTCTGCT AACGTAGGAA GCTCCAATAT TCTTCTAATT GATAATGTTT CCAGTGCCCA
  CCCCCCACAC ACACACCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50434330	NES13454880	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39205617					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50434330	NES13454880	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62748999 () rs orientation: forward

Symbol	Name	Function Class
Spink10	serine peptidase inhibitor, Kazal type 10	within coordinates
Spink13	serine peptidase inhibitor, Kazal type 13	within coordinates
Tssr153633	transcription start site region 153633	235 bp upstream
Tssr153634	transcription start site region 153634	205 bp upstream
Tssr153635	transcription start site region 153635	181 bp upstream