rs39205735 SNP Detail

Summary

• ID
  rs39205735
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:121316531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCCCTCG CCTGATTCCA
  CTCTTTGAGG GTAAAGGTTT GGAGCCGAGT TTTCACCTGC GCGAAACACA GATCCAGGAA
  TAAACGCATT CATCTCAAAG TCAGCTCCGG GTCCCCGGAC ATGGCTGGCT GGTCCACACA
  GACGCCATAT CGAAGGAAGT GTTTTCCCTT TAATTTTAGT CTTTGCCCTT TCTACAGATG
  R
  TTTAAAAGCA ATGAAAATGC GCCTCCCCTA TCTGCTCCAT GCAGATCCTT CGAGACAGAG
  CCCAGAATCA GAACTTTGGC AAACCAAACC TCAGGTGAGA CTACAGGGAC AAGTTTGCAC
  ACGTATTATC ATTCTTTTAT TATTGTTGTT ATTGCAATTG TGAAGATGGA ACCCCGGTCC
  TCAAAAATGA TAAGCACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51983394	NES14995671	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs39205735					SNP	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51983394	NES14995671	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121316531 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21156	CpG island 21156	119 bp distal
Gins2	GINS complex subunit 2	717 bp upstream
Gm10614	predicted gene 10614	within coordinates
Rr401181	regulatory region 401181	554 bp downstream
Rr671590	regulatory region 671590	267 bp distal
Rr671591	regulatory region 671591	255 bp distal
Rr671592	regulatory region 671592	within coordinates
Rr671593	regulatory region 671593	1928 bp proximal
Tssr83202	transcription start site region 83202	742 bp upstream
Tssr83203	transcription start site region 83203	724 bp upstream
Tssr83204	transcription start site region 83204	712 bp upstream
Tssr83205	transcription start site region 83205	702 bp upstream