rs39208997 SNP Detail

Summary

• ID
  rs39208997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75424833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTTTGAGG
  TATAGCCTGT GTCACTGACA TTTCCCTTCT AGAAACAAGA GAATCTCAGT TCCGTGCTTC
  CCTTCTGTGG GGTTTACCAT CCAACATCCC TGACTTCAGC CACACCGAAC CAGCATCCGC
  CATCTCTGTA GGCTTTTGTT TGCCTTTCTT TTTACGAAGC TGTTTCCATC TTGGTTATAT
  R
  GAAAACTCCA TAGCGAGTCC CTAGGACTTA GCTTGATGCT GCCTTCTCTG GAAAGCCTTC
  CCTTTCATTC TTTACCCCAT CTCTCTTCCT CATTCCTGCC CCTCCTGCCT CCTGCCTCTT
  CCTCGTTCCC ATCTCCCCAT CCTTTCTCCT CCTAGTCCTT CCTCTGACTT TTCCCCTCTT
  CCCTGGCATA GTCCAGGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss51533026	NES14628127	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs39208997					SNP	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533026	NES14628127	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75424833 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr495439	regulatory region 495439	684 bp distal
Tssr4482	transcription start site region 4482	1495 bp upstream
Tssr126634	transcription start site region 126634	99 bp downstream