rs39211241 SNP Detail

Summary

• ID
  rs39211241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:62318854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGTCTC TTCAAGGCTT
  AGTTCCTACT AGCAACGATG CCCTGGGAAG CCTTCCCTGA TGGCAGGCAT GGTGCATTCT
  CTTGGGAACA CTTCGGTGAC AATTCCTCCC TGCTTGGCAC TATTAGTCTC TTGTAGGCAA
  AAGGCCACCA AATCCTGTTG ACTGGGAAAG TGCCCTCCTG ACTCCTCACC TCTGTCTGTC
  R
  CCATGGAAGC CCTGGAAAGG TGGGTCATGG TGGCATGTGT CTGTAAACCT TGTATGACTT
  TGCCCAGGTT GGGGCTGAAG CTTTTTGGCC AGGTAGCCTG GTGTGAAACT CTCCCCCCTC
  CCCCCAGGTT CTCCAGGCCT GAAGAGTGAC TTCTAAGCAA CTTGTCAGCC TTCCTCTTGG
  CTTCAGCTGT TCCAGGCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	NZW/LacJ	WSB/EiJ
ss50718987	NES14253096	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	NZW/LacJ	WSB/EiJ
rs39211241					SNP	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50718987	NES14253096	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:62318854 () rs orientation: forward

Symbol	Name	Function Class
Rr196313	regulatory region 196313	1747 bp proximal
Rr201157	regulatory region 201157	547 bp proximal