rs39211902 SNP Detail

Summary

• ID
  rs39211902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84471021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCTTAAGT GGAATTTGGA CCTTTTTTTT TTCCTCCAAA
  AAATGGTATA ACCTCAGGGC TCAATGTCCC CACAGACGCC CTGGCAGGCA GAGCCTCCCT
  R
  GGACTTGATT CGTCCTGTCT GTTGAATGAA GATTAAACCA AGCATGGCAG CTCATGTCTG
  TTATCCCAGC ACTAGGAAGG TAGAGCCAGG GGCATTATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss51971726	NES14984896	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	G	A		G	G
ss145361225	ENSMUSSNP1295054	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss322745696	CHEV_8_86268291	CHEVERUD	SCREENING_POP	f	SNP									A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs39211902					SNP	A	A	A	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971726	NES14984896	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84471021 () rs orientation: forward

Symbol	Name	Function Class
Gm46046	predicted gene, 46046	within coordinates
Tssr2621	transcription start site region 2621	1827 bp downstream