rs39215352 SNP Detail

Summary

• ID
  rs39215352
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8928109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCCACAC AACTTAGAGC
  TTTTGTGTGT GCTTATTATT ATGATGATCC TTCTTGTTAT TGTTTTTTGT GGTGGTGCTG
  TAGATCAAAA CCCAGAACCT CATATGTTCT GGTTTAGTGG TTTACCGTTG AGCTCCATCT
  CTGGCACAGA AGTGGCTTTA TATACGTATT TTCTGATCTG AAAGCATAAT GTGTTTTTAA
  R
  TAAGGTTAAG TAGCTTGATA GGCCATTTTC TCCATTATTA ATCTTTAGGC CATTAGAGTA
  AACAACTGGT CAGGGTAGAG AGGGAGGAAA GAATGGTAAT GAAACTACAT AGGCAAGGAA
  AGTGGGAACA TTTTCTATTT CATCCCCCTT CTCCCTCTAC TGACAGTGGC TCAGGCACCT
  CTGAAACCAA AAACACCTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50609160	NES13644103	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39215352					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50609160	NES13644103	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8928109 () rs orientation: forward

Symbol	Name	Function Class
Gm59132	predicted gene, 59132	within coordinates
Mta2	metastasis-associated gene family, member 2	within coordinates
Rr359578	regulatory region 359578	492 bp proximal
Rr363780	regulatory region 363780	1691 bp proximal
Tssr154900	transcription start site region 154900	1325 bp upstream