rs39215835 SNP Detail

Summary

• ID
  rs39215835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:75768716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCAGCTCT GGCTAGTGTA
  CTTCTGTCTG TTGCTGCAGA TGGTCCAGGA AGTACAGGTG GCCTGAAAGA TCAACAGTTA
  ACAAAGGGTT ATCTTTAGAA ACAGAAAACT ATAACTGAGG TGTGCTCAAG ATAACTGTCA
  CATTTTACCT GGGACAGTAT CATTTTGGAT GAGTTCTAAG ATGAAAAAAA AATCGGACGG
  Y
  TTTTATGACC AGTAAATATC ACAGGACTTC ATGTACAGAA CTGAGCAAAC CCGCACATGT
  CAAAACTCCA TCAATATTAT AATACACTTA AAGTATTTAC TGTGTGCATA TTATTTCTGC
  TTTTGTTGAA ATAGGATCTT TCTTTGGAGT CCAAGCTTTC CTAGAACACA CCGATGAACT
  CAGGCTAAGC AGGACAAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51554966	NES14684349	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39215835					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51554966	NES14684349	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75768716 () rs orientation: forward

Symbol	Name	Function Class
Rr397723	regulatory region 397723	260 bp upstream
Rr578364	regulatory region 578364	152 bp distal
Rr578365	regulatory region 578365	350 bp proximal
Rr578366	regulatory region 578366	471 bp proximal