rs39216017 SNP Detail

Summary

• ID
  rs39216017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57172934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAC CCGATAAAGT AAGAATCTGC
  R
  AAAGAAGCAA ACTCACCAGG TATGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52020754	NES15041779	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A	A	A	A	A		G	A	A	A		A
ss136517984	ENSMUSSNP2091442	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A
ss322971876	CHEV_9_57113458	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39216017					SNP	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52020754	NES15041779	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57172934 () rs orientation: forward

Symbol	Name	Function Class
Gm68485	predicted gene, 68485	within coordinates
Gm68491	predicted gene, 68491	within coordinates
Rr679625	regulatory region 679625	196 bp distal
Rr679626	regulatory region 679626	1634 bp proximal
Tssr89773	transcription start site region 89773	138 bp downstream
Tssr89774	transcription start site region 89774	156 bp downstream