rs39216430 SNP Detail

Summary

• ID
  rs39216430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49025219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAGCCCC TCTTTAAGTG
  AGTATTTCTT GAGCAGTGTG AGGTTGGTGG CAGCCTTGGT GGTGGTCGAC TTTGTGGTGG
  TCTTCATTAG TTACTTAGTT ATTCAGTGAT TTAGTCAATC GCCTTGAGAT ACTATGTTGC
  CCTGCTGGCT TTGAACTTGA TTTGTAAGCT AGGGTAGCCT CAAACTTGTA TTGATTTCTC
  Y
  GCTGCTGTTA GGTTTGCATT GCCCAAATTT ATTCCTTTAT AGAATGTTTT AAATTGTAAA
  ATAGTTAATC CACATTTCTT ACTAAAAGTT GGAACTAACC AGGGAGAAGC CTAGCATAGA
  AGGAAAAGTC CCCATGTTCT CTCTTCCCCA GTTCATCCTG GCGTTGCTGG CCACGTCTCT
  GCGCAGATCA TTCTCTATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51658461	NES14824139	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39216430					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658461	NES14824139	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49025219 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	1835 bp distal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	1847 bp distal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56340	transcription start site region 56340	1824 bp downstream
Tssr56341	transcription start site region 56341	1564 bp downstream
Tssr56342	transcription start site region 56342	1532 bp downstream
Tssr56343	transcription start site region 56343	986 bp downstream
Tssr56344	transcription start site region 56344	962 bp downstream
Tssr56345	transcription start site region 56345	943 bp downstream
Tssr56346	transcription start site region 56346	890 bp downstream
Tssr56347	transcription start site region 56347	872 bp downstream
Tssr56348	transcription start site region 56348	849 bp downstream
Tssr56349	transcription start site region 56349	528 bp downstream
Tssr56350	transcription start site region 56350	499 bp downstream
Tssr56351	transcription start site region 56351	472 bp downstream
Tssr56352	transcription start site region 56352	453 bp downstream
Tssr56353	transcription start site region 56353	385 bp downstream
Tssr56354	transcription start site region 56354	371 bp downstream
Tssr56355	transcription start site region 56355	347 bp downstream
Tssr56356	transcription start site region 56356	329 bp downstream
Tssr56357	transcription start site region 56357	317 bp downstream
Tssr56358	transcription start site region 56358	299 bp downstream
Tssr56359	transcription start site region 56359	268 bp downstream
Tssr56360	transcription start site region 56360	221 bp downstream
Tssr56361	transcription start site region 56361	1597 bp upstream
Tssr56362	transcription start site region 56362	1825 bp upstream
Tssr60848	transcription start site region 60848	1877 bp upstream
Tssr60849	transcription start site region 60849	923 bp upstream
Tssr60850	transcription start site region 60850	870 bp upstream
Tssr60851	transcription start site region 60851	408 bp upstream
Tssr60852	transcription start site region 60852	379 bp upstream
Tssr60853	transcription start site region 60853	367 bp upstream
Tssr60854	transcription start site region 60854	350 bp upstream
Tssr60855	transcription start site region 60855	305 bp upstream
Tssr60856	transcription start site region 60856	278 bp upstream
Tssr60857	transcription start site region 60857	177 bp upstream