rs39217691 SNP Detail

Summary

• ID
  rs39217691
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34924425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCAGAGGCA AGTTACCATT GTGTCCACTG GGATCCCTCA
  GCAGGGGGAT GCCTTTCTTC ATACCTGAAG GTAGTCTGGC ATACCCACTT TGCACACCTG
  S
  AGCTATTCAA GCAATAAGAG ACTCATGCCC CACCCCCACT CCTATATACT CTTGTCTGCC
  CTTGGGAAGG CTCACACATC GAGTTTAAGA CAACCAGCT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss50525735	NES14089031	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	C	G	G	G	C	C		C	G	C	C
ss149109396	ENSMUSSNP5237893	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss322578212	CHEV_8_35520325	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs39217691					SNP	G	G	G	G	G	C	G	G	G	C	C	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50525735	NES14089031	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34924425 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20247	CpG island 20247	1569 bp distal
Gm39159	predicted gene, 39159	1435 bp downstream
Gm45349	predicted gene 45349	within coordinates
Gm46038	predicted gene, 46038	within coordinates
Rr400818	regulatory region 400818	1642 bp downstream
Rr662016	regulatory region 662016	1486 bp distal