rs39220296 SNP Detail

Summary

• ID
  rs39220296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128847036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAGTTTG TTAGACACAG
  AAAATACTAT AATTAGTAGA GAGCAATAAG AGACGGACCA TAGTGGCGGC TTCCTTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCCCTCTCT CCCTCCCTCC CTCCCCCCCT
  CTCTCTCTCC TTCCCTTTCT CCATCTTCCC CTGTAGCCCA GACTTTCCTT GAACTTACAA
  Y
  CATGTACCAC TTTAGCCCCC AGATTTTTAT ATTATAATAC AAAAGAGAAC TTATCTCAGA
  GAGACAGTAA GCAGACAAAT ACTTTAGAAT GTGACATAGT CATATCCCAA GTTCATGTGT
  TAATTTGAGA GAGAAAGAGG GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAATGA GAATACACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51843325	NES14704408	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	T	C		C	T	C		C
ss321688102	CHEV_5_129275847	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs39220296					SNP	C	T	T	T	T	T	T	T	T	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843325	NES14704408	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128847036 () rs orientation: forward

Symbol	Name	Function Class
Gm42875	predicted gene 42875	61 bp upstream
Rimbp2	RIMS binding protein 2	within coordinates