rs39221452 SNP Detail

Summary

• ID
  rs39221452
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8502021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCTCCTCT GTTCTGTCCA TGTACCATAG ATGGTACCTA
  CGTAAGCTTG GGTCACAACA TGTGCTAGTT GGTATCTTCC TCAGGAGGGC TGGAGCACAA
  S
  ACTCCTCTAA CTGATTATAG ATGCCACAGC TCCACCAGCC AAGCCACCTC TTTCCTAGCC
  TCTTCCTATC AGCTCCAGCT TCTGCTCCTT TGGGAAAACC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51776433	NES14543157	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39221452					SNP	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51776433	NES14543157	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8502021 () rs orientation: forward

Symbol	Name	Function Class
Gm59855	predicted gene, 59855	1406 bp upstream
Litafd	LITAF domain containing	246 bp downstream
Rr319307	regulatory region 319307	1780 bp proximal
Rr322150	regulatory region 322150	821 bp distal
Tssr137004	transcription start site region 137004	1278 bp downstream
Tssr139871	transcription start site region 139871	1406 bp upstream