rs39221902 SNP Detail

Summary

• ID
  rs39221902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:33695734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTATCTA ATCCCTGATT
  AGTCTACTGC TAGGGATCCT CCTCTCCTTT AATTTAATTC TACTAAAAAG CTAACAAGAT
  TCCTTTCCCT TCTGATTTAG CCTCATATGG GCTGCATCAG TGATTCTTAA GTAAGTTGTT
  ACAGTGTTAA TTAAGATTTT GTGGTCAGGC TCCATCCTTT AATAGATATG ATAGGATTTG
  R
  CTTCCTCTGT ATTTTCAAGT AAGCAACCTT CAAACATTCT ATGATCTCTC TACTACTGAG
  AAGATTTGAT ACACTGGAGG GATGCTGAAG CAACAAGCCG TCTATTGATT TGTCTTTGAG
  TATAATTGAC TCATCCCTAA GAACCTTGGG TGCAAAAGGA CCCCTAGAAT CTCCGTTTGT
  TTTTTGGTTG TTTGTTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51595725	NES14852329	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39221902					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51595725	NES14852329	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33695734 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Exoc4	exocyst complex component 4			Intron
				Noncoding-Transcript-Variant
Rr379165	regulatory region 379165			1413 bp upstream
Rr628210	regulatory region 628210			1847 bp distal