rs39224703 SNP Detail

Summary

• ID
  rs39224703
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:68727603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGCTGA GGATCTTCTC
  ATTTAATCTG TGTGGGTTTA GCCTTTCTGG GTAGATCTCT AAAGGATGAC TTGCTATGGA
  AATTCTTATC TCTCAGCATG AATGTTTCAA GGGTATGGGA GACAGAGGGG GAAGGAGAAG
  GGATGACGGG GAAGAGACAG GGCTACAGAC AACGCAGAGC TACAGGCTTT ATTTTCTCAT
  S
  TTCTCACTGG GAATCTAGGC CTGAAACTAA GTAGCTCACA CTGGCCTGGA ACTGCTATCT
  CTCTATTTCA GCATCTCAAG TGCTGGGATA ATAAATCCTT GCCACTACCA CACACTAGCC
  TGGGAAATAG AACACCACCA CTTCTGCTGT TTTCTACTGA GCACACAGAC CGATACCTGG
  TACAGCAATG GCCTGCATGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50562557	NES14070982	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39224703					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50562557	NES14070982	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:68727603 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20401	CpG island 20401	1614 bp proximal
Rr382222	regulatory region 382222	1817 bp downstream
Rr664392	regulatory region 664392	1878 bp distal
Rr664393	regulatory region 664393	1126 bp proximal
Rr664394	regulatory region 664394	1627 bp proximal
Sh2d4a	SH2 domain containing 4A	1616 bp upstream
Tssr77594	transcription start site region 77594	1740 bp upstream
Tssr77595	transcription start site region 77595	1762 bp upstream
Tssr77596	transcription start site region 77596	1852 bp upstream