rs39232731 SNP Detail

Summary

• ID
  rs39232731
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97805397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTGCTA AAGAAGCTGG
  CTTCTGCTGC CAAGGCTCCT ATTAATTATC ACTCTATCTC TAATTTAGCC TTCTCAGTGT
  TGAGAGAAGG CACATGTAAG CCTTCTGCTG GAGGGTTGCA ATGAGATCTC CATAGTCACC
  TTCTTTCTGA GCCGGTTGTG TAGACTCTAT GTTCAGCCAA AGGGCCAGGG TGGCCCTGGT
  K
  AGTGTTTTCG TCTTTCTTCC ATAAGTTGTT TGGTAGTTCG TATTTAGCAT GGTTGTGGGT
  TTTGTTGTTG TTGTTGTTGT TGTTTTTTCC TTCTGATTCT GGCCTGAGTA AGAATCAAAT
  AAGCCTTTAC CTTGGGATCT CAGACTGATT TCCAGTCTGT TCTTGAACCT AAAATGAAGA
  CAGCTTGAAA ACATGTAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51375335	NES13725666	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39232731					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51375335	NES13725666	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97805397 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Rr635225	regulatory region 635225	499 bp proximal
Tssr1945	transcription start site region 1945	1120 bp downstream
Tssr57866	transcription start site region 57866	1467 bp downstream
Tssr57867	transcription start site region 57867	1194 bp downstream
Tssr57868	transcription start site region 57868	1172 bp downstream
Tssr57869	transcription start site region 57869	1134 bp downstream
Tssr57870	transcription start site region 57870	975 bp downstream
Tssr57871	transcription start site region 57871	957 bp downstream
Tssr57872	transcription start site region 57872	187 bp downstream
Tssr57873	transcription start site region 57873	141 bp downstream
Tssr57874	transcription start site region 57874	124 bp downstream
Tssr57875	transcription start site region 57875	104 bp downstream
Tssr57876	transcription start site region 57876	74 bp downstream
Tssr57877	transcription start site region 57877	824 bp upstream
Tssr57878	transcription start site region 57878	868 bp upstream
Tssr57879	transcription start site region 57879	884 bp upstream
Tssr57880	transcription start site region 57880	937 bp upstream
Tssr57881	transcription start site region 57881	1137 bp upstream
Tssr57882	transcription start site region 57882	1235 bp upstream