rs39234713 SNP Detail

Summary

• ID
  rs39234713
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60196899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCAGGAT GGGAACTGAT
  AGCAGACATG GCTGCGTTTC TTAATGTATT TAGCACTGGC CACCCATGCC ATTGCTCAAC
  AGGCCTCTTG GCCAGCCGCT GAGAACTATT CTATACTGCT CATTAAATTT GAGAGTTGAG
  TTCCAGCCTC AACTCTCAGA GCTCAACCAC AGCATTCCCT GGGTCTATTA ATGATGCTTC
  Y
  AGACGAGATC TTTGGGTTCT CCCTTTCTAG TCCCTGTCTG AGTGGCTAAA TGTTATTTTA
  CGGAAGAGTA GCTACATCAC ACTAGGTAAA AGTCCAAGTG GGTTTCAGGT AAGAGGAAGT
  GTAAGGGATA AGTAAGGGAA GAAGCCTGGC GTTTGATAGC ATTGCCACGG GGCTTTGGAT
  TTCCCCTGAG ATCAGGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50866520	NES14170948	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs39234713					SNP	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866520	NES14170948	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60196899 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Rr228092	regulatory region 228092	within coordinates
Vsir	V-set immunoregulatory receptor	within coordinates