rs39236818 SNP Detail

Summary

• ID
  rs39236818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75412547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAT GCCGGTGTCT CAGCCCTCCC
  Y
  GACGTTTCAT TTCATGTCTC CCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51533227	NES14628246	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C	T	C	C		C	C	C	C		C
ss139749924	ENSMUSSNP6176102	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
ss324673320	CHEV_14_75574914	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39236818					SNP	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533227	NES14628246	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75412547 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr404213	regulatory region 404213	1575 bp upstream
Rr495436	regulatory region 495436	277 bp proximal
Tssr4478	transcription start site region 4478	155 bp downstream
Tssr126621	transcription start site region 126621	129 bp downstream
Tssr126622	transcription start site region 126622	99 bp downstream
Tssr126623	transcription start site region 126623	1482 bp upstream
Tssr126624	transcription start site region 126624	1526 bp upstream
Tssr126625	transcription start site region 126625	1685 bp upstream
Tssr126626	transcription start site region 126626	1700 bp upstream
Tssr126627	transcription start site region 126627	1716 bp upstream
Tssr129768	transcription start site region 129768	300 bp upstream
Tssr129769	transcription start site region 129769	1473 bp downstream
Tssr129770	transcription start site region 129770	1542 bp downstream