rs39240821 SNP Detail

Summary

• ID
  rs39240821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127544290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCTGCC TTTGCTTCTC
  TAGTACTGGG ATTAAAGGCA TGTGTCACCG CGGCCTGGCA GTATTCCGGT TTTCTTTTCT
  CAGACAGCTC TATAGAGCTT CCATCCATCC ACCCATCCAC CCACCCATCC ATCCATCCAT
  CCACCATCTC CTGATCATGC ATTGCATTAG GACTGAGTGA CAGCAGAGTA CGATCAAAGA
  R
  CTCACCCAGT GCTGTAGGGC TGGCAGGTGC GAGAGCAGAC AAAGGGTTGG CAGGTGTTCG
  AGCAGACATG CTTCCGTGCA TTATAGTTGG GGCCACTAAG CCTGTGCAGA TAGCCATGGG
  AGTGGATAGC ATGGATCTCC TTGACTGTTC TGGGAAAGAG TTCTCAGCAG CCTGAAAACT
  AGACTGGCCA GAGGTGGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50947103	NES14150383	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39240821					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50947103	NES14150383	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127544290 () rs orientation: forward

Symbol	Name	Function Class
Myo1a	myosin IA	within coordinates
Rr213604	regulatory region 213604	490 bp distal
Rr221966	regulatory region 221966	1533 bp distal
Rr226492	regulatory region 226492	352 bp distal
Tssr96246	transcription start site region 96246	1615 bp downstream
Tssr96247	transcription start site region 96247	1582 bp downstream